Tighten sequence numbers recovery #22212

jasontedor · 2016-12-16T00:52:26Z

This commit touches addresses issues related to recovery and sequence numbers:

A sequence number can be assigned and a Lucene commit created with a
maximum sequence number at least as large as that sequence number,
yet the operation corresponding to that sequence number can be
missing from both the Lucene commit and the translog. This means that
upon recovery the local checkpoint will be stuck at or below this
missing sequence number. To address this, we force the local
checkpoint to the maximum sequence number in the Lucene commit when
opening the engine. Note that there can still be gaps in the history
in the translog but we do not address those here.
The global checkpoint is transferred to the target shard at the end
of peer recovery.
Additionally, we reenable the relocation integration tests.

Lastly, this work uncovered some bugs in the assignment of sequence
numbers on replica operations:

setting the sequence number on replica write requests was missing,
very likely introduced as a result of resolving merge conflicts
handling operations that arrive out of order on a replica and have a
version conflict with a previous operation were never marked as
processed

Relates #10708

jasontedor · 2016-12-16T02:24:40Z

retest this please

jasontedor · 2016-12-16T04:17:11Z

retest this please

This commit touches addresses issues related to recovery and sequence numbers: - A sequence number can be assigned and a Lucene commit created with a maximum sequence number at least as large as that sequence number, yet the operation corresponding to that sequence number can be missing from both the Lucene commit and the translog. This means that upon recovery the local checkpoint will be stuck at or below this missing sequence number. To address this, we force the local checkpoint to the maximum sequence number in the Lucene commit when opening the engine. Note that there can still be gaps in the history in the translog but we do not address those here. - The global checkpoint is transferred to the target shard at the end of peer recovery. - Additionally, we reenable the relocation integration tests. Lastly, this work uncovered some bugs in the assignment of sequence numbers on replica operations: - setting the sequence number on replica write requests was missing, very likely introduced as a result of resolving merge conflicts - handling operations that arrive out of order on a replica and have a version conflict with a previous operation were never marked as processed

jasontedor · 2016-12-16T10:56:22Z

retest this please

bleskes

Looks great. I left some suggestion. I do think there is something wrong with the inner delete method on the engine

bleskes · 2016-12-16T13:22:30Z

core/src/main/java/org/elasticsearch/action/bulk/TransportShardBulkAction.java

@@ -150,6 +150,7 @@ protected WritePrimaryResult shardOperationOnPrimary(BulkShardRequest request, I
                        final long version = indexResult.getVersion();
                        indexRequest.version(version);
                        indexRequest.versionType(indexRequest.versionType().versionTypeForReplicationAndRecovery());
+                        indexRequest.seqNo(indexResult.getSeqNo());


maybe assert at the end of this method that the seqNo is set on the replica request?

I pushed 1c71393.

bleskes · 2016-12-16T13:27:34Z

core/src/main/java/org/elasticsearch/index/engine/InternalEngine.java

                seqNoService = sequenceNumberService(shardId, engineConfig.getIndexSettings(), seqNoStats);
+                // norelease
+                /*
+                 * We have no guarantees that all operations above the local checkpoint are in the Lucene commit. These means that we there


nit: "are in the lucene commit" -> "are in the lucene commit or the translog generation associated with it"

I pushed 1c71393.

bleskes · 2016-12-16T13:31:35Z

core/src/main/java/org/elasticsearch/index/engine/InternalEngine.java

+                seqNo = delete.seqNo();
+            }
+
+            if (checkVersionConflict(delete, currentVersion, expectedVersion, deleted)) {


why do we do this twice now? I'm not sure this what you intended?

Also - it feels like this can simplified based on the origin. I do wonder if the code reuse in checkVersionConflict is worth the extra complexity it brings to reading the code.

Oops. I pushed 1c71393.

bleskes · 2016-12-16T13:33:08Z

core/src/main/java/org/elasticsearch/index/seqno/GlobalCheckpointService.java

@@ -152,9 +152,6 @@ synchronized void updateCheckpointOnReplica(long globalCheckpoint) {
        if (this.globalCheckpoint <= globalCheckpoint) {


can you add a comment about when the current global checkpoint can be higher? here is what I wrote in #10708

Note that the global checkpoint is a local knowledge of that is update under the mandate of the primary. It may be that the primary information is lagging compared to a replica. This can happen when a replica is promoted to a primary (but still has stale info).

I pushed 1c71393.

bleskes · 2016-12-16T13:36:29Z

core/src/main/java/org/elasticsearch/indices/recovery/RecoverySourceHandler.java

@@ -391,7 +391,7 @@ public void finalizeRecovery() {
        StopWatch stopWatch = new StopWatch().start();
        logger.trace("[{}][{}] finalizing recovery to {}", indexName, shardId, request.targetNode());
        cancellableThreads.execute(() -> {
-            recoveryTarget.finalizeRecovery();
+            recoveryTarget.finalizeRecovery(shard.getGlobalCheckpoint());
            shard.markAllocationIdAsInSync(recoveryTarget.getTargetAllocationId());


paranoia - can we flip this around and mark the target allocation as "in sync" before we give it the global checkpoint? it at least reads better as "we know you are in sync and therefore every global checkpoint advances will take you into account"

I pushed 1c71393.

bleskes · 2016-12-16T13:37:34Z

core/src/main/java/org/elasticsearch/indices/recovery/RecoveryTargetHandler.java

-     * tombstone files.
-     **/
-    void finalizeRecovery();
+     * The finalize request clears unreferenced translog files, refreshes the engine now that new segments are available, enables garbage


I don't think this is correct anymore - clean the translog files? (I know it was there before, it just caught my eye)

bleskes · 2016-12-16T13:37:35Z

core/src/main/java/org/elasticsearch/indices/recovery/RecoveryTargetHandler.java

-     * tombstone files.
-     **/
-    void finalizeRecovery();
+     * The finalize request clears unreferenced translog files, refreshes the engine now that new segments are available, enables garbage


I don't think this is correct anymore - clean the translog files? (I know it was there before, it just caught my eye)

You're right, it was already not correct. I pushed 1c71393.

bleskes · 2016-12-16T13:38:43Z

core/src/test/java/org/elasticsearch/index/engine/InternalEngineTests.java

+                    @Override
+                    public long generateSeqNo() {
+                        if (rarely()) {
+                            // force skipping a sequence number


you evil person :)

I wonder if we should do the test based on real world scenarios we know can happen. I think it will make things clearer?

For example, using a replica engine :

Index a doc, with seq#1

Delete the same doc with seq#3

Flush

index doc with seq#2

To do so on a primary takes something more evil - instead of skiping translog ops, make sure this come "out of order". So make the seq number service put a seq# aside but then serve it on a follow up request.

I think this also serve as documentation of when this can happen.

I have a plan here, but it's a work-in-progress.

I presume this is still in progress? (which is fine)

I pushed f57eb99.

bleskes · 2016-12-16T13:47:58Z

core/src/test/java/org/elasticsearch/index/engine/InternalEngineTests.java

+        }
+    }
+
+    public void testOutOfOrderSequenceNumbersWithVersionConflict() {


++. Maybe also add a sanity check that a get on the doc at the end gives us what we expect? (deleted or found)

I pushed 1c71393.

May the git push --force be with you if you require a more elaborative commit message.

bleskes

left some comments

bleskes · 2016-12-16T19:39:33Z

core/src/test/java/org/elasticsearch/index/engine/InternalEngineTests.java

+            }
+        }
+
+        final boolean exists = operations.get(operations.size() - 1) instanceof Engine.Index;


hmm... what happens if the last op is an index, but the previous op was a delete with a higher version?

This represents whether or not the last operation before shuffling, and hence the operation with the highest version, is an index or delete operation. I think that this is correct?

yep. it's just before the shuffle. got confused. all good.

bleskes · 2016-12-16T19:43:53Z

core/src/main/java/org/elasticsearch/index/engine/InternalEngine.java

-            } else {
-                final long seqNo;
-                if (index.origin() == Operation.Origin.PRIMARY) {
+            final boolean conflict = checkVersionConflict(index, currentVersion, expectedVersion, deleted);


What happens if this is a replica and we have a version conflict and throws an exception? I think we still end up not marking the seq no as completed?

How about something like this?

diff --git a/core/src/main/java/org/elasticsearch/index/engine/InternalEngine.java b/core/src/main/java/org/elasticsearch/index/engine/InternalEngine.java index e75dc47..d16c11e 100644 --- a/core/src/main/java/org/elasticsearch/index/engine/InternalEngine.java +++ b/core/src/main/java/org/elasticsearch/index/engine/InternalEngine.java @@ -86,6 +86,7 @@ import java.util.concurrent.locks.Lock; import java.util.concurrent.locks.ReentrantLock; import java.util.function.Function; import java.util.function.LongSupplier; +import java.util.function.Supplier; public class InternalEngine extends Engine { @@ -444,11 +445,18 @@ public class InternalEngine extends Engine { } } - private boolean checkVersionConflict( + /** + * checks for version conflicts and returns the right result object if conflict was detected. returns `null` + * if no conflicts was found and indexing should proceed as normal + */ + private <T extends Result> T checkVersionConflict( final Operation op, final long currentVersion, final long expectedVersion, - final boolean deleted) { + final boolean deleted, + final Supplier<T> resultOnSuccess, + final Function<Exception, T> resultOnFailure) { + final T result; if (op.versionType() == VersionType.FORCE) { if (engineConfig.getIndexSettings().getIndexVersionCreated().onOrAfter(Version.V_6_0_0_alpha1_UNRELEASED)) { // If index was created in 5.0 or later, 'force' is not allowed at all @@ -461,15 +469,17 @@ public class InternalEngine extends Engine { if (op.versionType().isVersionConflictForWrites(currentVersion, expectedVersion, deleted)) { if (op.origin().isRecovery()) { - // version conflict, but okay - return true; + // version conflict, but okay, mark as success + result = resultOnSuccess.get(); } else { // fatal version conflict - throw new VersionConflictEngineException(shardId, op.type(), op.id(), - op.versionType().explainConflictForWrites(currentVersion, expectedVersion, deleted)); + result = resultOnFailure.apply(new VersionConflictEngineException(shardId, op.type(), op.id(), + op.versionType().explainConflictForWrites(currentVersion, expectedVersion, deleted)); } + } else { + result = null; } - return false; + return result; } private long checkDeletedAndGCed(VersionValue versionValue) { @@ -584,6 +594,7 @@ public class InternalEngine extends Engine { final Translog.Location location; final long updatedVersion; IndexResult indexResult = null; + long seqNo = index.seqNo(); try (Releasable ignored = acquireLock(index.uid())) { lastWriteNanos = index.startTime(); /* if we have an autoGeneratedID that comes into the engine we can potentially optimize @@ -648,23 +659,18 @@ public class InternalEngine extends Engine { } } final long expectedVersion = index.version(); - final boolean conflict = checkVersionConflict(index, currentVersion, expectedVersion, deleted); + IndexResult result = checkVersionConflict(index, currentVersion, expectedVersion, deleted, + () -> new IndexResult(currentVersion, index.seqNo(), false), + exception -> new IndexResult(exception, currentVersion, index.seqNo())); - final long seqNo; - if (index.origin() == Operation.Origin.PRIMARY) { - if (!conflict) { + if (result == null) { + + if (index.origin() == Operation.Origin.PRIMARY) { seqNo = seqNoService.generateSeqNo(); - } else { - seqNo = SequenceNumbersService.UNASSIGNED_SEQ_NO; } - } else { - seqNo = index.seqNo(); - } - if (conflict) { - // skip index operation because of version conflict on recovery - indexResult = new IndexResult(expectedVersion, seqNo, false); - } else { + index.parsedDoc().updateSeqID(seqNo, index.primaryTerm()); + updatedVersion = index.versionType().updateVersion(currentVersion, expectedVersion); index.parsedDoc().version().setLongValue(updatedVersion); @@ -686,8 +692,8 @@ public class InternalEngine extends Engine { } indexResult = new IndexResult(updatedVersion, seqNo, deleted); location = index.origin() != Operation.Origin.LOCAL_TRANSLOG_RECOVERY - ? translog.add(new Translog.Index(index, indexResult)) - : null; + ? translog.add(new Translog.Index(index, indexResult)) + : null; versionMap.putUnderLock(index.uid().bytes(), new VersionValue(updatedVersion)); indexResult.setTranslogLocation(location); } @@ -695,7 +701,7 @@ public class InternalEngine extends Engine { indexResult.freeze(); return indexResult; } finally { - if (indexResult != null && indexResult.getSeqNo() != SequenceNumbersService.UNASSIGNED_SEQ_NO) { + if (seqNo != SequenceNumbersService.UNASSIGNED_SEQ_NO) { seqNoService.markSeqNoAsCompleted(indexResult.getSeqNo()); } }

I strengthened the test to include the replica case (it caught the issue), and incorporated your suggestion.

jasontedor · 2016-12-17T12:35:50Z

Thanks @bleskes, I've responded to your feedback.

bleskes

LGTM! that test qualifies for the brain olympics :) left some minor comments that don't require another review

bleskes · 2016-12-17T12:30:31Z

core/src/main/java/org/elasticsearch/index/engine/InternalEngine.java

@@ -574,6 +611,7 @@ private IndexResult innerIndex(Index index) throws IOException {
        final Translog.Location location;
        final long updatedVersion;
        IndexResult indexResult = null;


nit - this can be put in scope and next to where it's created and probably made final

I pushed b9f68d4.

bleskes · 2016-12-17T12:32:46Z

core/src/main/java/org/elasticsearch/index/engine/InternalEngine.java

                deleteResult.setTranslogLocation(location);
            }
            deleteResult.setTook(System.nanoTime() - delete.startTime());
            deleteResult.freeze();
            return deleteResult;
        } finally {
-            if (deleteResult != null && deleteResult.getSeqNo() != SequenceNumbersService.UNASSIGNED_SEQ_NO) {
+            if (seqNo != SequenceNumbersService.UNASSIGNED_SEQ_NO) {
                seqNoService.markSeqNoAsCompleted(deleteResult.getSeqNo());


this should use the seqNo variable

I pushed b9f68d4.

bleskes · 2016-12-17T12:34:40Z

core/src/test/java/org/elasticsearch/index/engine/InternalEngineTests.java

+                    @Override
+                    public long generateSeqNo() {
+                        if (rarely()) {
+                            // force skipping a sequence number


I presume this is still in progress? (which is fine)

bleskes · 2016-12-17T12:35:23Z

core/src/test/java/org/elasticsearch/index/engine/InternalEngineTests.java

+        final Term uid = newUid("1");
+        final Document document = testDocumentWithTextField();
+        final AtomicLong sequenceNumber = new AtomicLong();
+        final Engine.Operation.Origin origin = randomFrom(PEER_RECOVERY, PRIMARY, PEER_RECOVERY);


I think you meant one of this to be translog?

I pushed b9f68d4.

bleskes · 2016-12-17T12:40:03Z

core/src/main/java/org/elasticsearch/index/engine/InternalEngine.java

-            if (deleteResult != null && deleteResult.getSeqNo() != SequenceNumbersService.UNASSIGNED_SEQ_NO) {
-                seqNoService.markSeqNoAsCompleted(deleteResult.getSeqNo());
+            if (seqNo != SequenceNumbersService.UNASSIGNED_SEQ_NO) {
+                seqNoService().markSeqNoAsCompleted(deleteResult.getSeqNo());


this should use the seqNo variable

I pushed b9f68d4. Annoying I caught that in the innerIndex but not here 😞.

jasontedor · 2016-12-17T13:21:05Z

Thanks @bleskes. I'll let CI have a go at this before merging.

jasontedor · 2016-12-17T14:20:27Z

My CI passes, but the PR CI build here is struggling with the checkout problem that we've been seeing. I'm going to merge and will watch our regular CI.

relates to #22212

jasontedor added :Sequence IDs v6.0.0-alpha1 labels Dec 16, 2016

jasontedor requested a review from bleskes December 16, 2016 00:52

bleskes mentioned this pull request Dec 16, 2016

Add Sequence Numbers to write operations #10708

Closed

64 tasks

jasontedor force-pushed the enable-relocation-it branch from 4402935 to 54f8aba Compare December 16, 2016 01:20

jasontedor force-pushed the enable-relocation-it branch from 54f8aba to 3164819 Compare December 16, 2016 04:46

bleskes suggested changes Dec 16, 2016

View reviewed changes

This is not the commit message you're looking for

1c71393

May the git push --force be with you if you require a more elaborative commit message.

bleskes suggested changes Dec 16, 2016

View reviewed changes

bleskes mentioned this pull request Dec 16, 2016

Add BWC layer to seq no infra and enable BWC tests #22185

Merged

Refactor handling of version conflicts and sequence numbers

3c37f4b

jasontedor force-pushed the enable-relocation-it branch from 2dc75b9 to 3c37f4b Compare December 17, 2016 11:15

Add realistic tests for gaps in commit

f57eb99

Remove stale comment

2a8d069

bleskes approved these changes Dec 17, 2016

View reviewed changes

Cleanup tighten sequence number recovery

b9f68d4

Close get result to avoid suite resource leak

3935af2

jasontedor merged commit 58d73ba into elastic:master Dec 17, 2016

jasontedor deleted the enable-relocation-it branch December 17, 2016 14:20

bleskes added a commit that referenced this pull request Dec 18, 2016

InternalEngine should use global checkpoint when committing the translog

b78f7bc

relates to #22212

clintongormley added the >enhancement label May 5, 2017

clintongormley added the :Distributed Indexing/Engine Anything around managing Lucene and the Translog in an open shard. label Feb 14, 2018

clintongormley removed the :Sequence IDs label Feb 14, 2018

		@@ -152,9 +152,6 @@ synchronized void updateCheckpointOnReplica(long globalCheckpoint) {
		if (this.globalCheckpoint <= globalCheckpoint) {

Tighten sequence numbers recovery #22212

Tighten sequence numbers recovery #22212

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jasontedor commented Dec 16, 2016 • edited Loading

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jasontedor commented Dec 17, 2016

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